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algorithms.clustering.bgmm
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API
ΒΆ
Release:
0.4.0.dev
Date:
November 11, 2014
algorithms.clustering.bgmm
Module:
algorithms.clustering.bgmm
Classes
BGMM
VBGMM
Functions
algorithms.clustering.ggmixture
Module:
algorithms.clustering.ggmixture
Classes
GGGM
GGM
Gamma
algorithms.clustering.gmm
Module:
algorithms.clustering.gmm
Classes
GMM
GridDescriptor
Functions
algorithms.clustering.hierarchical_clustering
Module:
algorithms.clustering.hierarchical_clustering
Class
WeightedForest
Functions
algorithms.clustering.imm
Module:
algorithms.clustering.imm
Classes
IMM
MixedIMM
Functions
algorithms.clustering.utils
Module:
algorithms.clustering.utils
Functions
algorithms.clustering.von_mises_fisher_mixture
Module:
algorithms.clustering.von_mises_fisher_mixture
Class
VonMisesMixture
Functions
algorithms.diagnostics.commands
Module:
algorithms.diagnostics.commands
Functions
algorithms.diagnostics.screens
Module:
algorithms.diagnostics.screens
Functions
algorithms.diagnostics.timediff
Module:
algorithms.diagnostics.timediff
Functions
algorithms.diagnostics.tsdiffplot
Module:
algorithms.diagnostics.tsdiffplot
Functions
algorithms.fwhm
Module:
algorithms.fwhm
Classes
ReselImage
Resels
algorithms.graph.bipartite_graph
Module:
algorithms.graph.bipartite_graph
Class
BipartiteGraph
Functions
algorithms.graph.field
Module:
algorithms.graph.field
Class
Field
Functions
algorithms.graph.forest
Module:
algorithms.graph.forest
Forest
algorithms.graph.graph
Module:
algorithms.graph.graph
Classes
Graph
WeightedGraph
Functions
algorithms.group.parcel_analysis
Module:
algorithms.group.parcel_analysis
ParcelAnalysis
algorithms.interpolation
Module:
algorithms.interpolation
ImageInterpolator
algorithms.kernel_smooth
Module:
algorithms.kernel_smooth
Class
LinearFilter
Functions
algorithms.optimize
Module:
algorithms.optimize
algorithms.registration.affine
Module:
algorithms.registration.affine
Classes
Affine
Affine2D
Rigid
Rigid2D
Similarity
Similarity2D
Functions
algorithms.registration.chain_transform
Module:
algorithms.registration.chain_transform
ChainTransform
algorithms.registration.groupwise_registration
Module:
algorithms.registration.groupwise_registration
Classes
FmriRealign4d
Image4d
Realign4d
Realign4dAlgorithm
SpaceRealign
SpaceTimeRealign
Functions
algorithms.registration.histogram_registration
Module:
algorithms.registration.histogram_registration
Class
HistogramRegistration
Functions
algorithms.registration.optimizer
Module:
algorithms.registration.optimizer
Functions
algorithms.registration.polyaffine
Module:
algorithms.registration.polyaffine
PolyAffine
algorithms.registration.resample
Module:
algorithms.registration.resample
algorithms.registration.scripting
Module:
algorithms.registration.scripting
Functions
algorithms.registration.similarity_measures
Module:
algorithms.registration.similarity_measures
Classes
CorrelationCoefficient
CorrelationRatio
CorrelationRatioL1
DiscreteParzenMutualInformation
MutualInformation
NormalizedMutualInformation
ParzenMutualInformation
SimilarityMeasure
SupervisedLikelihoodRatio
Functions
algorithms.registration.transform
Module:
algorithms.registration.transform
Transform
algorithms.resample
Module:
algorithms.resample
Functions
algorithms.segmentation.brain_segmentation
Module:
algorithms.segmentation.brain_segmentation
BrainT1Segmentation
algorithms.segmentation.segmentation
Module:
algorithms.segmentation.segmentation
Class
Segmentation
Functions
algorithms.slicetiming.timefuncs
Module:
algorithms.slicetiming.timefuncs
Functions
algorithms.statistics.bayesian_mixed_effects
Module:
algorithms.statistics.bayesian_mixed_effects
algorithms.statistics.bench.bench_intvol
Module:
algorithms.statistics.bench.bench_intvol
Functions
algorithms.statistics.empirical_pvalue
Module:
algorithms.statistics.empirical_pvalue
Class
NormalEmpiricalNull
Functions
algorithms.statistics.formula.formulae
Module:
algorithms.statistics.formula.formulae
Formula objects
Classes
Beta
Factor
FactorTerm
Formula
RandomEffects
Term
Functions
algorithms.statistics.mixed_effects_stat
Module:
algorithms.statistics.mixed_effects_stat
Class
MixedEffectsModel
Functions
algorithms.statistics.models.family.family
Module:
algorithms.statistics.models.family.family
Classes
Binomial
Family
Gamma
Gaussian
InverseGaussian
Poisson
algorithms.statistics.models.family.links
Module:
algorithms.statistics.models.family.links
Classes
CDFLink
CLogLog
Link
Log
Logit
Power
algorithms.statistics.models.family.varfuncs
Module:
algorithms.statistics.models.family.varfuncs
Classes
Binomial
Power
VarianceFunction
algorithms.statistics.models.glm
Module:
algorithms.statistics.models.glm
General linear models
Model
algorithms.statistics.models.model
Module:
algorithms.statistics.models.model
Classes
FContrastResults
LikelihoodModel
LikelihoodModelResults
Model
TContrastResults
algorithms.statistics.models.nlsmodel
Module:
algorithms.statistics.models.nlsmodel
NLSModel
algorithms.statistics.models.regression
Module:
algorithms.statistics.models.regression
Classes
AREstimator
ARModel
GLSModel
OLSModel
RegressionResults
WLSModel
Functions
algorithms.statistics.models.setupscons
Module:
algorithms.statistics.models.setupscons
algorithms.statistics.models.utils
Module:
algorithms.statistics.models.utils
Class
StepFunction
Functions
algorithms.statistics.onesample
Module:
algorithms.statistics.onesample
Functions
algorithms.statistics.rft
Module:
algorithms.statistics.rft
Classes
ChiBarSquared
ChiSquared
ECcone
ECquasi
FStat
Hotelling
IntrinsicVolumes
MultilinearForm
OneSidedF
Roy
TStat
fnsum
Functions
algorithms.statistics.utils
Module:
algorithms.statistics.utils
Functions
algorithms.utils.fast_distance
Module:
algorithms.utils.fast_distance
algorithms.utils.matrices
Module:
algorithms.utils.matrices
Functions
algorithms.utils.pca
Module:
algorithms.utils.pca
Functions
core.image.image
Module:
core.image.image
Classes
Image
SliceMaker
Functions
core.image.image_list
Module:
core.image.image_list
ImageList
core.image.image_spaces
Module:
core.image.image_spaces
Functions
core.reference.array_coords
Module:
core.reference.array_coords
Classes
ArrayCoordMap
Grid
core.reference.coordinate_map
Module:
core.reference.coordinate_map
Common API
Operations on mappings (module level functions)
Classes
AffineTransform
AxisError
CoordMapMaker
CoordMapMakerError
CoordinateMap
Functions
core.reference.coordinate_system
Module:
core.reference.coordinate_system
Classes
CoordSysMaker
CoordSysMakerError
CoordinateSystem
CoordinateSystemError
Functions
core.reference.slices
Module:
core.reference.slices
Functions
core.reference.spaces
Module:
core.reference.spaces
Classes
AffineError
AxesError
SpaceError
SpaceTypeError
XYZSpace
Functions
core.utils.generators
Module:
core.utils.generators
Functions
interfaces.matlab
Module:
interfaces.matlab
Functions
interfaces.spm
Module:
interfaces.spm
Class
SpmInfo
Functions
io.files
Module:
io.files
Examples
Functions
io.nibcompat
Module:
io.nibcompat
Functions
io.nifti_ref
Module:
io.nifti_ref
Background
NIFTI input coordinate system
NIFTI output coordinate system
NIFTI input / output mapping
Time-like axes
Does this NIFTI image have a time-like axis?
What we do about all this
Class
NiftiError
Functions
labs.bindings.benchmarks.bench_numpy
Module:
labs.bindings.benchmarks.bench_numpy
Functions
labs.datasets.converters
Module:
labs.datasets.converters
Functions
labs.datasets.transforms.affine_transform
Module:
labs.datasets.transforms.affine_transform
AffineTransform
labs.datasets.transforms.affine_utils
Module:
labs.datasets.transforms.affine_utils
Functions
labs.datasets.transforms.transform
Module:
labs.datasets.transforms.transform
Classes
CompositionError
Transform
labs.datasets.volumes.volume_data
Module:
labs.datasets.volumes.volume_data
VolumeData
labs.datasets.volumes.volume_field
Module:
labs.datasets.volumes.volume_field
VolumeField
labs.datasets.volumes.volume_grid
Module:
labs.datasets.volumes.volume_grid
VolumeGrid
labs.datasets.volumes.volume_img
Module:
labs.datasets.volumes.volume_img
VolumeImg
labs.glm.benchmarks.bench_glm
Module:
labs.glm.benchmarks.bench_glm
Functions
labs.glm.glm
Module:
labs.glm.glm
Classes
contrast
glm
Functions
labs.group.permutation_test
Module:
labs.group.permutation_test
Classes
permutation_test
permutation_test_onesample
permutation_test_onesample_graph
permutation_test_twosample
Functions
labs.mask
Module:
labs.mask
Functions
labs.spatial_models.bayesian_structural_analysis
Module:
labs.spatial_models.bayesian_structural_analysis
labs.spatial_models.bsa_io
Module:
labs.spatial_models.bsa_io
labs.spatial_models.discrete_domain
Module:
labs.spatial_models.discrete_domain
Classes
DiscreteDomain
MeshDomain
NDGridDomain
StructuredDomain
Functions
labs.spatial_models.hierarchical_parcellation
Module:
labs.spatial_models.hierarchical_parcellation
Functions
labs.spatial_models.hroi
Module:
labs.spatial_models.hroi
Class
HierarchicalROI
Functions
labs.spatial_models.mroi
Module:
labs.spatial_models.mroi
Class
SubDomains
Functions
labs.spatial_models.parcel_io
Module:
labs.spatial_models.parcel_io
Functions
labs.spatial_models.parcellation
Module:
labs.spatial_models.parcellation
MultiSubjectParcellation
labs.spatial_models.structural_bfls
Module:
labs.spatial_models.structural_bfls
LandmarkRegions
labs.statistical_mapping
Module:
labs.statistical_mapping
Class
LinearModel
Functions
labs.utils.reproducibility_measures
Module:
labs.utils.reproducibility_measures
Functions
labs.utils.simul_multisubject_fmri_dataset
Module:
labs.utils.simul_multisubject_fmri_dataset
Functions
labs.utils.zscore
Module:
labs.utils.zscore
labs.viz_tools.activation_maps
Module:
labs.viz_tools.activation_maps
Functions
labs.viz_tools.anat_cache
Module:
labs.viz_tools.anat_cache
labs.viz_tools.cm
Module:
labs.viz_tools.cm
Functions
labs.viz_tools.coord_tools
Module:
labs.viz_tools.coord_tools
Functions
labs.viz_tools.maps_3d
Module:
labs.viz_tools.maps_3d
Functions
labs.viz_tools.slicers
Module:
labs.viz_tools.slicers
Classes
BaseSlicer
BaseStackedSlicer
CutAxes
OrthoSlicer
XSlicer
YSlicer
ZSlicer
Function
labs.viz_tools.test.test_activation_maps
Module:
labs.viz_tools.test.test_activation_maps
Functions
labs.viz_tools.test.test_cm
Module:
labs.viz_tools.test.test_cm
Functions
labs.viz_tools.test.test_coord_tools
Module:
labs.viz_tools.test.test_coord_tools
Functions
labs.viz_tools.test.test_edge_detect
Module:
labs.viz_tools.test.test_edge_detect
Functions
labs.viz_tools.test.test_slicers
Module:
labs.viz_tools.test.test_slicers
modalities.fmri.design
Module:
modalities.fmri.design
Functions
modalities.fmri.design_matrix
Module:
modalities.fmri.design_matrix
Class
DesignMatrix
Functions
modalities.fmri.experimental_paradigm
Module:
modalities.fmri.experimental_paradigm
Classes
BlockParadigm
EventRelatedParadigm
Paradigm
Function
modalities.fmri.fmri
Module:
modalities.fmri.fmri
FmriImageList
modalities.fmri.fmristat.hrf
Module:
modalities.fmri.fmristat.hrf
References
Functions
modalities.fmri.fmristat.invert
Module:
modalities.fmri.fmristat.invert
modalities.fmri.fmristat.model
Module:
modalities.fmri.fmristat.model
Classes
AR1
ModelOutputImage
OLS
Functions
modalities.fmri.fmristat.outputters
Module:
modalities.fmri.fmristat.outputters
Classes
RegressionOutput
RegressionOutputList
TOutput
Functions
modalities.fmri.glm
Module:
modalities.fmri.glm
Examples
Classes
Contrast
FMRILinearModel
GeneralLinearModel
Function
modalities.fmri.hemodynamic_models
Module:
modalities.fmri.hemodynamic_models
Functions
modalities.fmri.hrf
Module:
modalities.fmri.hrf
Functions
modalities.fmri.spm.correlation
Module:
modalities.fmri.spm.correlation
Functions
modalities.fmri.spm.model
Module:
modalities.fmri.spm.model
Class
SecondStage
Functions
modalities.fmri.spm.reml
Module:
modalities.fmri.spm.reml
Functions
modalities.fmri.spm.trace
Module:
modalities.fmri.spm.trace
modalities.fmri.utils
Module:
modalities.fmri.utils
Functions
pkg_info
Module:
pkg_info
Functions
testing.decorators
Module:
testing.decorators
Functions
testing.doctester
Module:
testing.doctester
Classes
DocTestSkip
NipyDocTestFinder
NipyDoctest
NipyOutputChecker
Functions
testing.nosepatch
Module:
testing.nosepatch
testing.nosetester
Module:
testing.nosetester
Class
NipyNoseTester
Functions
utils.arrays
Module:
utils.arrays
utils.compat3
Module:
utils.compat3
utils.perlpie
Module:
utils.perlpie
Parameters
Requires
Examples
Functions
utils.skip_test
Module:
utils.skip_test
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